Transcript: ENSMUST00000220506.2 Vsnl1-202

Description

visinin-like 1 [Source:MGI Symbol;Acc:MGI:1349453]

Gene Synonyms

VILIP

Location

Chromosome 12: 11,375,243-11,485,641 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 24 domains and features, is associated with 6116 variant alleles and maps to 205 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000054459.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000072299.7	Vsnl1-201	1903	191aa	ENSMUSP00000072145.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS25816	P62761 Q4W4C9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000220506.2	Vsnl1-202	1699	191aa	ENSMUSP00000152711.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS25816	P62761 Q4W4C9	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,699 bps, Translation length: 191 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P62761

CCDS

This transcript is a member of the Mouse CCDS set: CCDS25816

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000220506.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

upstream ATG

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000220506.2 Vsnl1-202

Summary

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Transcript: ENSMUST00000220506.2 Vsnl1-202

Summary

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