Transcript: ENSMUST00000177479.2 Ly6l-201

Description

lymphocyte antigen 6 complex, locus L [Source:MGI Symbol;Acc:MGI:5313101]

Gene Synonyms

Gm20654

Location

About this transcript

This transcript has 3 exons, is annotated with 9 domains and features, is associated with 974 variant alleles and maps to 23 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000177479.2	Ly6l-201	430	140aa	ENSMUSP00000134982.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS84172	H3BJG9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 430 bps, Translation length: 140 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: H3BJG9

CCDS

This transcript is a member of the Mouse CCDS set: CCDS84172

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000177479.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

non-submitted evidence [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.