Transcript: ENSMUST00000170861.4 Trat1-201

Description

T cell receptor associated transmembrane adaptor 1 [Source:MGI Symbol;Acc:MGI:1924897]

Gene Synonyms

C030046M14Rik, Tcrim, Trim

Location

Chromosome 16: 48,555,053-48,592,319 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 2453 variant alleles and maps to 81 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000030775.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000239408.2	Trat1-203	684	197aa	ENSMUSP00000159369.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37352	A0A338P6G9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000231701.3	Trat1-202	4665	187aa	ENSMUSP00000155986.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P6G9 Q3UU67	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000170861.4	Trat1-201	647	54aa	ENSMUSP00000129808.4	Nonsense mediated decay		A0A0R4J237	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 647 bps, Translation length: 54 residues

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000170861.4

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000170861.4 Trat1-201

Summary

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Transcript: ENSMUST00000170861.4 Trat1-201

Summary

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