Transcript: ENSMUST00000170759.3 Gpatch11-201

Description

G patch domain containing 11 [Source:MGI Symbol;Acc:MGI:1858435]

Gene Synonyms

2310002B06Rik, Ccdc75

Location

Chromosome 17: 79,143,018-79,155,737 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 14 domains and features, is associated with 1232 variant alleles and maps to 263 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000050668.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000170759.3	Gpatch11-201	4134	264aa	ENSMUSP00000126814.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28979	A0A0R4J215	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000233113.2	Gpatch11-202	401	92aa	ENSMUSP00000156550.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2WAW3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000233775.2	Gpatch11-204	394	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000233545.2	Gpatch11-203	1889	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000233913.2	Gpatch11-205	522	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 10, Coding exons: 8, Transcript length: 4,134 bps, Translation length: 264 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS28979

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000170759.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000170759.3 Gpatch11-201

Summary

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Transcript: ENSMUST00000170759.3 Gpatch11-201

Summary

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