Transcript: ENSMUST00000169862.2 Taf4b-201

Description

TATA-box binding protein associated factor 4b [Source:MGI Symbol;Acc:MGI:2152345]

Gene Synonyms

105kDa, 2610524B04Rik, 4932409F03Rik, TAFII105, Taf2c2

Location

Chromosome 18: 14,916,302-15,033,416 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 20 domains and features, is associated with 4972 variant alleles and maps to 302 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000054321.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000169862.2	Taf4b-201	5149	855aa	ENSMUSP00000126909.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50227	A0A3B2W725	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000234789.2	Taf4b-202	5134	850aa	ENSMUSP00000157354.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EGS4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P3: Where the APPRIS core modules are unable to choose a clear principal variant and there more than one of the variants have distinct CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier as the principal variant. The lower the CCDS identifier, the earlier it was annotated. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P3,

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 5,149 bps, Translation length: 855 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS50227

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000169862.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

not organism-supported [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000169862.2 Taf4b-201

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Transcript: ENSMUST00000169862.2 Taf4b-201

Summary

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