Transcript: ENSMUST00000156068.3 6330403K07Rik-201

Description

RIKEN cDNA 6330403K07 gene [Source:MGI Symbol;Acc:MGI:1918001]

Location

About this transcript

This transcript has 2 exons, is annotated with 1 domain and feature, is associated with 693 variant alleles and maps to 196 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000238695.2	6330403K07Rik-202	1573	121aa	ENSMUSP00000158674.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8VBZ2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000156068.3	6330403K07Rik-201	1494	121aa	ENSMUSP00000158145.2	Nonsense mediated decay		Q8VBZ2	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 1,494 bps, Translation length: 121 residues

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000156068.3

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.