Transcript: ENSMUST00000146088.8 Ttc38-203

Description

tetratricopeptide repeat domain 38 [Source:MGI Symbol;Acc:MGI:2146198]

Location

Chromosome 15: 85,716,507-85,743,023 forward strand.

About this transcript

This transcript has 14 exons, is annotated with 6 domains and features, is associated with 2372 variant alleles and maps to 354 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000035944.18 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000146088.8	Ttc38-203	3749	465aa	ENSMUSP00000114504.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27724	A3KMP2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000124011.2	Ttc38-201	342	62aa	ENSMUSP00000118863.2	Nonsense mediated decay		D6RH59	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000133158.2	Ttc38-202	2369	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 3,749 bps, Translation length: 465 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A3KMP2

CCDS

This transcript is a member of the Mouse CCDS set: CCDS27724

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000146088.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000146088.8 Ttc38-203

Summary

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Transcript: ENSMUST00000146088.8 Ttc38-203

Summary

About Us

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