Transcript: ENSMUST00000112843.2 Rtl4-202

Description

retrotransposon Gag like 4 [Source:MGI Symbol;Acc:MGI:3588192]

Gene Synonyms

C230031A03Rik, Mar4, Zcchc16

Location

Chromosome X: 143,471,903-143,905,407 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 5 domains and features, is associated with 24842 variant alleles and maps to 86 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000071679.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000112843.2	Rtl4-202	3635	304aa	ENSMUSP00000108462.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41158	Q3URY0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000096301.5	Rtl4-201	1758	304aa	ENSMUSP00000108463.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41158	Q3URY0	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 7, Coding exons: 1, Transcript length: 3,635 bps, Translation length: 304 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q3URY0

CCDS

This transcript is a member of the Mouse CCDS set: CCDS41158

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000112843.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000112843.2 Rtl4-202

Summary

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Transcript: ENSMUST00000112843.2 Rtl4-202

Summary

About Us

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