Transcript: ENSMUST00000111377.8 Lmx1a-202

Description

LIM homeobox transcription factor 1 alpha [Source:MGI Symbol;Acc:MGI:1888519]

Gene Synonyms

Lmx1.1, shaker short-tail

Location

Chromosome 1: 167,516,806-167,676,310 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 29 domains and features, is associated with 9615 variant alleles and maps to 154 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000026686.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000028003.9	Lmx1a-201	3347	382aa	ENSMUSP00000028003.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS15460	Q543W2 Q9JKU8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000111377.8	Lmx1a-202	3200	382aa	ENSMUSP00000107008.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS15460	Q543W2 Q9JKU8	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 3,200 bps, Translation length: 382 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9JKU8

CCDS

This transcript is a member of the Mouse CCDS set: CCDS15460

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000111377.8

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

not organism-supported [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000111377.8 Lmx1a-202

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Transcript: ENSMUST00000111377.8 Lmx1a-202

Summary

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