Transcript: ENSMUST00000107979.2 Spata31f1a-201

Description

spermatogenesis associated 31 subfamily F member 1A [Source:MGI Symbol;Acc:MGI:3651059]

Gene Synonyms

Fam205a1, Gm12429

Location

About this transcript

This transcript has 4 exons, is annotated with 17 domains and features, is associated with 452 variant alleles and maps to 293 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000107979.2	Spata31f1a-201	4146	1314aa	ENSMUSP00000103613.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS71367	D3YZF6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 4,146 bps, Translation length: 1,314 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS71367

Transcript Support Level (TSL)

TSL:3

Version

ENSMUST00000107979.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.