Transcript: ENSMUST00000101254.9 Ccdc142-201

Description

coiled-coil domain containing 142 [Source:MGI Symbol;Acc:MGI:3045292]

Gene Synonyms

A230058J24Rik

Location

Chromosome 6: 83,078,582-83,085,375 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 15 domains and features, is associated with 846 variant alleles and maps to 104 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000107499.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000101254.9	Ccdc142-201	2317	738aa	ENSMUSP00000098812.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS39527	Q8CAI1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000203533.2	Ccdc142-203	2197	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000134891.2	Ccdc142-202	447	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,317 bps, Translation length: 738 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8CAI1

CCDS

This transcript is a member of the Mouse CCDS set: CCDS39527

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000101254.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

not organism-supported [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000101254.9 Ccdc142-201

Summary

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Transcript: ENSMUST00000101254.9 Ccdc142-201

Summary

About Us

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