Transcript: ENSMUST00000100484.6 Eif3d-201

Description

eukaryotic translation initiation factor 3, subunit D [Source:MGI Symbol;Acc:MGI:1933181]

Gene Synonyms

66/67kDa, Eif3s7, eIF3p66, mouse translation initiation factor eIF3 p66

Location

Chromosome 15: 77,843,198-77,855,013 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 9 domains and features, is associated with 1276 variant alleles and maps to 235 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000016554.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000100484.6	Eif3d-201	1899	548aa	ENSMUSP00000098053.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37130	O70194	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000230419.2	Eif3d-207	706	169aa	ENSMUSP00000155152.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VK20	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000229713.2	Eif3d-203	395	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000229784.2	Eif3d-205	2546	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000229824.2	Eif3d-206	742	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000230711.2	Eif3d-208	673	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000229413.2	Eif3d-202	590	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000229737.2	Eif3d-204	248	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 1,899 bps, Translation length: 548 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O70194

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37130

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000100484.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000100484.6 Eif3d-201

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Transcript: ENSMUST00000100484.6 Eif3d-201

Summary

About Us

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