Transcript: ENSMUST00000089473.5 Zdhhc20-201

Description

zinc finger, DHHC domain containing 20 [Source:MGI Symbol;Acc:MGI:1923215]

Gene Synonyms

4930542A17Rik, 5033406L14Rik, B230110O18Rik, ENSMUSG00000055956

Location

Chromosome 14: 58,070,160-58,127,733 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 8 domains and features, is associated with 2951 variant alleles and maps to 409 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000021969.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000226057.2	Zdhhc20-205	2179	380aa	ENSMUSP00000153568.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5Y5T1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000089473.5	Zdhhc20-201	5186	368aa	ENSMUSP00000086900.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27162	Q5Y5T1-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000226029.2	Zdhhc20-204	465	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000224133.2	Zdhhc20-202	299	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000225955.2	Zdhhc20-203	2356	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 5,186 bps, Translation length: 368 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5Y5T1

CCDS

This transcript is a member of the Mouse CCDS set: CCDS27162

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000089473.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000089473.5 Zdhhc20-201

Summary

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Transcript: ENSMUST00000089473.5 Zdhhc20-201

Summary

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