Transcript: ENSMUST00000070345.5 Usp39-201

Description

ubiquitin specific peptidase 39 [Source:MGI Symbol;Acc:MGI:107622]

Gene Synonyms

CGI-21, D6Wsu157e, SAD1

Location

Chromosome 6: 72,295,661-72,322,167 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 16 domains and features, is associated with 1630 variant alleles and maps to 287 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000056305.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000070345.5	Usp39-201	2244	564aa	ENSMUSP00000064515.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS20238	Q3TIX9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000206262.2	Usp39-203	701	65aa	ENSMUSP00000145792.2	Nonsense mediated decay		A0A0U1RP18	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000154799.2	Usp39-202	751	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 2,244 bps, Translation length: 564 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q3TIX9

CCDS

This transcript is a member of the Mouse CCDS set: CCDS20238

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000070345.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000070345.5 Usp39-201

Summary

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Transcript: ENSMUST00000070345.5 Usp39-201

Summary

About Us

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