Transcript: ENSMUST00000051720.6 Sh3tc2-201

Description

SH3 domain and tetratricopeptide repeats 2 [Source:MGI Symbol;Acc:MGI:2444417]

Gene Synonyms

D430044G18Rik

Location

Chromosome 18: 62,086,146-62,148,786 forward strand.

About this transcript

This transcript has 17 exons, is annotated with 32 domains and features, is associated with 4273 variant alleles and maps to 240 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000045629.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000051720.6	Sh3tc2-201	4536	1289aa	ENSMUSP00000055094.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37840	Q80VA5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000235860.2	Sh3tc2-203	4974	1228aa	ENSMUSP00000157442.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3UPD8	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000236759.2	Sh3tc2-204	3615	995aa	ENSMUSP00000158088.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BAH3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000235652.2	Sh3tc2-202	4487	1001aa	ENSMUSP00000158542.2	Nonsense mediated decay		Q80VA5-4	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 4,536 bps, Translation length: 1,289 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q80VA5

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37840

Transcript Support Level (TSL)

TSL:2

Version

ENSMUST00000051720.6

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000051720.6 Sh3tc2-201

Summary

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Transcript: ENSMUST00000051720.6 Sh3tc2-201

Summary

About Us

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