Transcript: ENSMUST00000049972.6 Scg2-201

Description

secretogranin II [Source:MGI Symbol;Acc:MGI:103033]

Gene Synonyms

Chgc, SgII

Location

Chromosome 1: 79,412,386-79,417,837 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 8 domains and features, is associated with 603 variant alleles and maps to 178 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000050711.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000049972.6	Scg2-201	2515	617aa	ENSMUSP00000062556.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS15089	Q03517	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000185234.2	Scg2-202	2317	577aa	ENSMUSP00000139740.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS78625	Q4W8U9	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 2,515 bps, Translation length: 617 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q03517

CCDS

This transcript is a member of the Mouse CCDS set: CCDS15089

Transcript Support Level (TSL)

TSL:2

Version

ENSMUST00000049972.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

not organism-supported [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000049972.6 Scg2-201

Summary

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Transcript: ENSMUST00000049972.6 Scg2-201

Summary

About Us

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