Transcript: ENSMUST00000047034.9 Ttbk1-201

Description

tau tubulin kinase 1 [Source:MGI Symbol;Acc:MGI:2147036]

Gene Synonyms

C330008L01Rik

Location

Chromosome 17: 46,753,374-46,798,601 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 42 domains and features, is associated with 2529 variant alleles and maps to 527 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000015599.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000047034.9	Ttbk1-201	6959	1308aa	ENSMUSP00000044580.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50125	Q6PCN3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P3: Where the APPRIS core modules are unable to choose a clear principal variant and there more than one of the variants have distinct CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier as the principal variant. The lower the CCDS identifier, the earlier it was annotated. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P3, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000225808.2	Ttbk1-203	8926	765aa	ENSMUSP00000153386.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YDE4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000223818.2	Ttbk1-202	430	71aa	ENSMUSP00000153583.2	Nonsense mediated decay		A0A286YE90	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 6,959 bps, Translation length: 1,308 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6PCN3

CCDS

This transcript is a member of the Mouse CCDS set: CCDS50125

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000047034.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

not organism-supported [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000047034.9 Ttbk1-201

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Transcript: ENSMUST00000047034.9 Ttbk1-201

Summary

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