Transcript: ENSMUST00000046038.9 Slc25a28-201

Description

solute carrier family 25, member 28 [Source:MGI Symbol;Acc:MGI:2180509]

Gene Synonyms

2210403D18Rik, Mfrn2, Mrs3/4

Location

Chromosome 19: 43,652,240-43,663,320 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 14 domains and features, is associated with 938 variant alleles and maps to 186 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000040414.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000046038.9	Slc25a28-201	1535	364aa	ENSMUSP00000036913.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29834	Q8R0Z5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000236433.2	Slc25a28-204	767	111aa	ENSMUSP00000158028.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BAC6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000237364.2	Slc25a28-205	1194	83aa	ENSMUSP00000157953.2	Nonsense mediated decay		A0A494BA64	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000236286.2	Slc25a28-203	1046	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000235953.2	Slc25a28-202	3724	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,535 bps, Translation length: 364 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8R0Z5

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29834

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000046038.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000046038.9 Slc25a28-201

Summary

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Transcript: ENSMUST00000046038.9 Slc25a28-201

Summary

About Us

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