Transcript: ENSMUST00000045296.6 Siah1a-201

Description

siah E3 ubiquitin protein ligase 1A [Source:MGI Symbol;Acc:MGI:108064]

Gene Synonyms

Sinh1a

Location

About this transcript

This transcript has 2 exons, is annotated with 18 domains and features, is associated with 1120 variant alleles and maps to 262 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000045296.6	Siah1a-201	1968	282aa	ENSMUSP00000044123.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS22504	P61092	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 1,968 bps, Translation length: 282 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P61092

CCDS

This transcript is a member of the Mouse CCDS set: CCDS22504

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000045296.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.