Transcript: ENSMUST00000044829.5 4921524L21Rik-201

Description

RIKEN cDNA 4921524L21 gene [Source:MGI Symbol;Acc:MGI:1918151]

Location

Chromosome 18: 6,603,629-6,638,966 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 9 domains and features, is associated with 2447 variant alleles and maps to 167 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000039540.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000044829.5	4921524L21Rik-201	1484	438aa	ENSMUSP00000035514.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50216	Q9D5T2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000234337.2	4921524L21Rik-202	1329	385aa	ENSMUSP00000157133.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EGB9	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000234821.2	4921524L21Rik-203	491	123aa	ENSMUSP00000157275.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EGN5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 1,484 bps, Translation length: 438 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS50216

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000044829.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000044829.5 4921524L21Rik-201

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Transcript: ENSMUST00000044829.5 4921524L21Rik-201

Summary

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