Mouse (GRCm39)
Description

SS18, nBAF chromatin remodeling complex subunit [Source:MGI Symbol;Acc:MGI:107708]

Gene Synonyms

Ssxt

Location
About this transcript

This transcript has 11 exons, is annotated with 14 domains and features, is associated with 3472 variant alleles and maps to 285 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000040924.9Ss18-2013098418aaENSMUSP00000046320.8
 
Protein coding
CCDS29070Q62280 Ensembl CanonicalGENCODE basicAPPRIS ALT1TSL:1
ENSMUST00000040964.13Ss18-2024153344aaENSMUSP00000047867.7
 
Protein coding
CCDS50225Q8BKL1 GENCODE basicTSL:1
ENSMUST00000092041.11Ss18-2032911387aaENSMUSP00000089673.4
 
Protein coding
CCDS57116Q8BJJ6 GENCODE basicAPPRIS P4TSL:1
ENSMUST00000234524.2Ss18-2062603313aaENSMUSP00000157096.2
 
Protein coding
Q8VHA8 GENCODE basic
ENSMUST00000235011.2Ss18-2102086143aaENSMUSP00000157229.2
 
Protein coding
A0A3Q4L318 CDS 5' incomplete
ENSMUST00000234224.2Ss18-205154961aaENSMUSP00000157300.2
 
Nonsense mediated decay
A0A3Q4EGQ6 -
ENSMUST00000234120.2Ss18-20497641aaENSMUSP00000157190.2
 
Nonsense mediated decay
A0A3Q4EI07 -
ENSMUST00000234544.2Ss18-2072967No protein-
 
Retained intron
--
ENSMUST00000234997.2Ss18-2092196No protein-
 
Retained intron
--
ENSMUST00000238844.2Ss18-2121046No protein-
 
Retained intron
--
ENSMUST00000235043.2Ss18-211922No protein-
 
Retained intron
--
ENSMUST00000234737.2Ss18-208568No protein-
 
Retained intron
--
Statistics

Exons: 11, Coding exons: 11, Transcript length: 3,098 bps, Translation length: 418 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q62280

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29070

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000040924.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.