Transcript: ENSMUST00000035565.5 Pkd1-201

Description

polycystin 1, transient receptor potential channel interacting [Source:MGI Symbol;Acc:MGI:97603]

Gene Synonyms

PC-1, PC1, polycystin-1

Location

Chromosome 17: 24,768,924-24,815,482 forward strand.

About this transcript

This transcript has 46 exons, is annotated with 151 domains and features, is associated with 2644 variant alleles and maps to 505 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000032855.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000035565.5	Pkd1-201	14164	4293aa	ENSMUSP00000049296.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28485	O08852	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000228550.2	Pkd1-207	1050	72aa	ENSMUSP00000154062.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BQG6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000227058.2	Pkd1-204	711	237aa	ENSMUSP00000153867.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BPP4	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000227836.2	Pkd1-206	702	234aa	ENSMUSP00000154626.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BRL4	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000228745.2	Pkd1-209	241	80aa	ENSMUSP00000153873.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BQ02	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000227107.2	Pkd1-205	6681	1231aa	ENSMUSP00000154792.2	Nonsense mediated decay		A0A2I3BRZ6	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000226883.2	Pkd1-203	855	27aa	ENSMUSP00000154668.2	Nonsense mediated decay		A0A2I3BRP8	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000228581.2	Pkd1-208	235	27aa	ENSMUSP00000154141.2	Nonsense mediated decay		A0A2I3BQE7	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000226178.2	Pkd1-202	3926	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000228750.2	Pkd1-210	762	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 46, Coding exons: 46, Transcript length: 14,164 bps, Translation length: 4,293 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O08852

CCDS

This transcript is a member of the Mouse CCDS set: CCDS28485

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000035565.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000035565.5 Pkd1-201

Summary

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Transcript: ENSMUST00000035565.5 Pkd1-201

Summary

About Us

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