Transcript: ENSMUST00000025357.9 Ap3s1-201

Description

adaptor-related protein complex 3, sigma 1 subunit [Source:MGI Symbol;Acc:MGI:1337062]

Gene Synonyms

[s]3A

Location

Chromosome 18: 46,874,943-46,923,893 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 7 domains and features, is associated with 2745 variant alleles and maps to 287 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024480.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000025357.9	Ap3s1-201	1520	193aa	ENSMUSP00000025357.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29236	Q3U8S0 Q9DCR2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000224622.2	Ap3s1-202	978	162aa	ENSMUSP00000153388.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YDU3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000225520.2	Ap3s1-204	957	162aa	ENSMUSP00000153557.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YDU3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000226108.2	Ap3s1-205	743	162aa	ENSMUSP00000153510.2	Nonsense mediated decay		A0A286YDU3	-
ENSMUST00000225415.2	Ap3s1-203	417	54aa	ENSMUSP00000153290.2	Nonsense mediated decay		A0A286YD58	-
ENSMUST00000234998.2	Ap3s1-206	1407	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,520 bps, Translation length: 193 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9DCR2

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29236

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000025357.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000025357.9 Ap3s1-201

Summary

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Transcript: ENSMUST00000025357.9 Ap3s1-201

Summary

About Us

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