Transcript: ENSMUST00000023530.5 Ropn1-201

Description

ropporin, rhophilin associated protein 1 [Source:MGI Symbol;Acc:MGI:1923628]

Gene Synonyms

1700008N21Rik, ODF6, RHPNAP1, ropporin

Location

Chromosome 16: 34,471,558-34,498,988 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 5 domains and features, is associated with 1864 variant alleles and maps to 107 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000022832.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000023530.5	Ropn1-201	875	212aa	ENSMUSP00000023530.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28137	Q9ESG2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000148562.8	Ropn1-202	575	154aa	ENSMUSP00000122122.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3Z184	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000231612.2	Ropn1-203	1147	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 875 bps, Translation length: 212 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9ESG2

CCDS

This transcript is a member of the Mouse CCDS set: CCDS28137

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000023530.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000023530.5 Ropn1-201

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Transcript: ENSMUST00000023530.5 Ropn1-201

Summary

About Us

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