Transcript: ENSMUST00000089332.5 Col8a1-201

Description

collagen, type VIII, alpha 1 [Source:MGI Symbol;Acc:MGI:88463]

Gene Synonyms

Col8a-1

Location

About this transcript

This transcript has 4 exons, is annotated with 35 domains and features, is associated with 6141 variant alleles and maps to 263 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000089332.5	Col8a1-201	5108	744aa	ENSMUSP00000086745.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37367	Q00780	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000232382.2	Col8a1-202	2801	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 5,108 bps, Translation length: 744 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q00780

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37367

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000089332.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.