Mouse (GRCm39)
Description

lysine (K)-specific demethylase 5D [Source:MGI Symbol;Acc:MGI:99780]

Gene Synonyms

HY, Jarid1d, Smcy

Location
About this transcript

This transcript has 26 exons, is annotated with 42 domains and features, is associated with 1575 variant alleles and maps to 414 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000055032.14Kdm5d-20179741548aaENSMUSP00000061095.8
 
Protein coding
CCDS30541Q62240 Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENSMUST00000189069.7Kdm5d-2072177476aaENSMUSP00000139636.2
 
Protein coding
Q8BQM3 GENCODE basicTSL:1
ENSMUST00000186726.7Kdm5d-2045916271aaENSMUSP00000140462.2
 
Nonsense mediated decay
A0A087WR43 TSL:1
ENSMUST00000186696.7Kdm5d-2033708691aaENSMUSP00000140663.2
 
Nonsense mediated decay
Q62240-4 TSL:5
ENSMUST00000188910.7Kdm5d-2064354No protein-
 
Retained intron
-TSL:1
ENSMUST00000187296.2Kdm5d-2054037No protein-
 
Retained intron
-TSL:1
ENSMUST00000189955.2Kdm5d-2092770No protein-
 
Retained intron
-TSL:NA
ENSMUST00000189626.7Kdm5d-2081821No protein-
 
Retained intron
-TSL:1
ENSMUST00000185542.2Kdm5d-202696No protein-
 
Retained intron
-TSL:3
Statistics

Exons: 26, Coding exons: 26, Transcript length: 7,974 bps, Translation length: 1,548 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q62240

CCDS

This transcript is a member of the Mouse CCDS set: CCDS30541

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000055032.14

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.