Description

lysine (K)-specific demethylase 5D [Source:MGI Symbol;Acc:MGI:99780]

Location
Gene

This transcript is a product of gene ENSMUSG00000056673

This gene has 9 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
Kdm5d-001ENSMUST000000550327974 bp1548 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS30541Q62240 NM_011419
NP_035549
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Kdm5d-004ENSMUST000001890692177 bp476 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q8BQM3 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Kdm5d-002ENSMUST000001867265916 bp271 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
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Kdm5d-003ENSMUST000001866963708 bp691 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
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Kdm5d-005ENSMUST000001889104354 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Kdm5d-008ENSMUST000001872964037 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Kdm5d-009ENSMUST000001899552770 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Kdm5d-006ENSMUST000001896261821 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Kdm5d-007ENSMUST00000185542696 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Statistics

Exons: 26 Coding exons: 26 Transcript length: 7,974 bps Translation length: 1,548 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS30541

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q62240

Ensembl version

ENSMUST00000055032.8

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays