Description

lysine (K)-specific demethylase 3A [Source:MGI Symbol;Acc:MGI:98847]

Synonyms

Jmjd1, Jhdm2a, 1700105C21Rik, Tsga, TGSA, Kiaa0742, C230043E16Rik, Jmjd1a, KDM2A, JHDM2a

Location
About this transcript

This transcript has 27 exons, is annotated with 8 domains and features, is associated with 17 variations and maps to 46 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Kdm3a-201ENSMUST0000016722048531323aaENSMUSP00000128789
 
Protein coding
CCDS20233Q6PCM1 NM_173001
NP_766589
TSL:1GENCODE basicAPPRIS P1
Kdm3a-001ENSMUST0000006550948161323aaENSMUSP00000065716
 
Protein coding
CCDS20233Q6PCM1 NM_001038695
NP_001033784
TSL:1GENCODE basicAPPRIS P1
Kdm3a-004ENSMUST0000020702347531323aaENSMUSP00000145959
 
Protein coding
CCDS20233--GENCODE basicAPPRIS P1
Kdm3a-003ENSMUST000002052892723834aaENSMUSP00000145719
 
Protein coding
---CDS 3' incomplete
Kdm3a-007ENSMUST0000020691667943aaENSMUSP00000145992
 
Nonsense mediated decay
---CDS 5' incomplete
Kdm3a-005ENSMUST000002054701718No protein-
 
Processed transcript
---
Kdm3a-006ENSMUST00000206597828No protein-
 
Processed transcript
---
Kdm3a-008ENSMUST00000206050341No protein-
 
Processed transcript
---
Kdm3a-002ENSMUST000002067043137No protein-
 
Retained intron
---
Kdm3a-012ENSMUST00000206357917No protein-
 
Retained intron
---
Kdm3a-011ENSMUST00000206339815No protein-
 
Retained intron
---
Kdm3a-013ENSMUST00000206582785No protein-
 
Retained intron
---
Kdm3a-009ENSMUST00000206798743No protein-
 
Retained intron
---
Kdm3a-010ENSMUST00000205505541No protein-
 
Retained intron
---
Statistics

Exons: 27 Coding exons: 25 Transcript length: 4,816 bps Translation length: 1,323 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS20233

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6PCM1

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENSMUST00000065509.10

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays