Mouse (GRCm39)
Description

lysine (K)-specific demethylase 3A [Source:MGI Symbol;Acc:MGI:98847]

Gene Synonyms

1700105C21Rik, C230043E16Rik, Jmjd1, Jmjd1a, Tsga

Location
About this transcript

This transcript has 27 exons, is annotated with 16 domains and features, is associated with 1951 variant alleles and maps to 343 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000167220.4Kdm3a-20248531323aaENSMUSP00000128789.2
 
Protein coding
CCDS20233Q6PCM1 Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENSMUST00000065509.11Kdm3a-20148161323aaENSMUSP00000065716.5
 
Protein coding
CCDS20233Q6PCM1 GENCODE basicAPPRIS P1TSL:1
ENSMUST00000207023.2Kdm3a-21447531323aaENSMUSP00000145959.2
 
Protein coding
CCDS20233Q6PCM1 GENCODE basicAPPRIS P1TSL:5
ENSMUST00000205289.2Kdm3a-2032723834aaENSMUSP00000145719.2
 
Protein coding
A0A0U1RNV6 TSL:1CDS 3' incomplete
ENSMUST00000206916.2Kdm3a-21367943aaENSMUSP00000145992.2
 
Nonsense mediated decay
A0A0U1RPI3 TSL:3CDS 5' incomplete
ENSMUST00000205470.2Kdm3a-2041718No protein-
 
Protein coding CDS not defined
-TSL:5
ENSMUST00000206597.2Kdm3a-210828No protein-
 
Protein coding CDS not defined
-TSL:3
ENSMUST00000206050.2Kdm3a-206341No protein-
 
Protein coding CDS not defined
-TSL:3
ENSMUST00000206704.2Kdm3a-2113137No protein-
 
Retained intron
-TSL:1
ENSMUST00000206357.2Kdm3a-208917No protein-
 
Retained intron
-TSL:2
ENSMUST00000206339.2Kdm3a-207815No protein-
 
Retained intron
-TSL:2
ENSMUST00000206582.2Kdm3a-209785No protein-
 
Retained intron
-TSL:3
ENSMUST00000206798.2Kdm3a-212743No protein-
 
Retained intron
-TSL:2
ENSMUST00000205505.2Kdm3a-205541No protein-
 
Retained intron
-TSL:2
Statistics

Exons: 27, Coding exons: 25, Transcript length: 4,816 bps, Translation length: 1,323 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6PCM1

CCDS

This transcript is a member of the Mouse CCDS set: CCDS20233

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000065509.11

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.