Description

trafficking protein particle complex 9 [Source:MGI Symbol;Acc:MGI:1923760]

Location
About this transcript

This transcript has 22 exons, is annotated with 4 domains and features, is associated with 46 variations and maps to 38 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Trappc9-204ENSMUST000001706334688940aaENSMUSP00000131997
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS49630E9Q3T8 NM_001164641
NP_001158113
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Trappc9-202ENSMUST0000008977040471139aaENSMUSP00000087202
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS37095Q3U0M1 NM_180662
NP_850993
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Trappc9-201ENSMUST000000232763302960aaENSMUSP00000023276
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS37096Q3U0M1 NM_029640
NP_083916
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Trappc9-203ENSMUST000001681913127852aaENSMUSP00000131295
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS49629E9PZ41 NM_001164642
NP_001158114
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Statistics

Exons: 22 Coding exons: 21 Transcript length: 4,047 bps Translation length: 1,139 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37095

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q3U0M1

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENSMUST00000089770.6

Type

Known protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays