Description

claudin 2 [Source:MGI Symbol;Acc:MGI:1276110]

About this transcript

This transcript has 2 exons, is annotated with 17 domains and features, is associated with 4 variations and maps to 25 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Cldn2-001ENSMUST000000548893044230aaENSMUSP00000054219
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS30437A3KGB5 O88552 NM_016675
NP_057884
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Cldn2-002ENSMUST00000135224755131aaENSMUSP00000121152
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A3KGB5 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Cldn2-003ENSMUST000001727792902aaENSMUSP00000134644
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 2 Coding exons: 1 Transcript length: 3,044 bps Translation length: 230 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS30437

Uniprot

This transcript corresponds to the following Uniprot identifiers: O88552

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENSMUST00000054889.3

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays