Description

transmembrane and coiled-coil domains 4 [Source:MGI Symbol;Acc:MGI:1924306]

About this transcript

This transcript has 16 exons, is annotated with 6 domains and features, is associated with 31 variations and maps to 32 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Tmco4-002ENSMUST000000509493318631aaENSMUSP00000059320
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS18837Q91WU4 NM_029857
NP_001292352
NP_084133
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Tmco4-001ENSMUST000000430422922631aaENSMUSP00000041388
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS18837Q91WU4 NP_001292352
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Tmco4-004ENSMUST0000012363666056aaENSMUSP00000122817
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2ALL4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Tmco4-003ENSMUST000001248351992No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 16 Coding exons: 13 Transcript length: 2,922 bps Translation length: 631 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS18837

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q91WU4

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENSMUST00000043042.6

Type

Known protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays