Mouse (GRCm39)
Description

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:MGI Symbol;Acc:MGI:1338032]

Gene Synonyms

Sema Y, Semay

Location
About this transcript

This transcript has 18 exons, is annotated with 28 domains and features, is associated with 817 variant alleles and maps to 325 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000090823.8Sema6c-2024029963aaENSMUSP00000088333.2
 
Protein coding
CCDS71289E9Q613 Ensembl CanonicalGENCODE basicAPPRIS P4TSL:1
ENSMUST00000090821.10Sema6c-2013933931aaENSMUSP00000088331.4
 
Protein coding
CCDS17604Q9WTM3 GENCODE basicAPPRIS ALT2TSL:5
ENSMUST00000107217.6Sema6c-2033595923aaENSMUSP00000102835.2
 
Protein coding
G5E8N4 GENCODE basicTSL:1
ENSMUST00000168321.8Sema6c-2133553963aaENSMUSP00000129081.3
 
Protein coding
CCDS71289E9Q613 GENCODE basicAPPRIS P4TSL:1
ENSMUST00000202315.3Sema6c-2142843931aaENSMUSP00000144039.2
 
Protein coding
CCDS17604Q9WTM3 GENCODE basicAPPRIS ALT2TSL:1
ENSMUST00000131742.8Sema6c-20854929aaENSMUSP00000142525.2
 
Protein coding
A0A0G2JDV7 TSL:2CDS 3' incomplete
ENSMUST00000142449.9Sema6c-2123936124aaENSMUSP00000123457.3
 
Nonsense mediated decay
E9Q4N1 TSL:1
ENSMUST00000204709.3Sema6c-2153562124aaENSMUSP00000144702.2
 
Nonsense mediated decay
E9Q4N1 TSL:1
ENSMUST00000131620.8Sema6c-20771680aaENSMUSP00000138154.2
 
Nonsense mediated decay
S4R1B4 TSL:5
ENSMUST00000130662.2Sema6c-205890No protein-
 
Protein coding CDS not defined
-TSL:2
ENSMUST00000142306.2Sema6c-211450No protein-
 
Protein coding CDS not defined
-TSL:2
ENSMUST00000130814.8Sema6c-206347No protein-
 
Protein coding CDS not defined
-TSL:2
ENSMUST00000134125.8Sema6c-2095095No protein-
 
Retained intron
-TSL:2
ENSMUST00000126597.2Sema6c-204814No protein-
 
Retained intron
-TSL:3
ENSMUST00000141607.8Sema6c-210788No protein-
 
Retained intron
-TSL:3
Statistics

Exons: 18, Coding exons: 18, Transcript length: 3,553 bps, Translation length: 963 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS71289

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000168321.8

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.