Transcript: ENSMUST00000115580.3 Gm5820-201

Description

predicted gene 5820 [Source:MGI Symbol;Acc:MGI:3646292]

Location

Chromosome 18: 39,025,511-39,104,329 forward strand.

About this transcript

This transcript has 5 exons, is associated with 4900 variant alleles and maps to 87 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000117994.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000115580.3	Gm5820-201	2187	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000156167.2	Gm5820-202	703	No protein	-	lncRNA	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000187912.2	Gm5820-203	312	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 2,187 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000115580.3

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000115580.3 Gm5820-201

Summary

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Transcript: ENSMUST00000115580.3 Gm5820-201

Summary

About Us

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