Transcript: ENSMUST00000045173.10 Tgfbi-201

Description

transforming growth factor, beta induced [Source:MGI Symbol;Acc:MGI:99959]

Gene Synonyms

68kDa, Beta-ig, bIG-h3

Location

Chromosome 13: 56,757,399-56,787,171 forward strand.

About this transcript

This transcript has 17 exons, is annotated with 30 domains and features, is associated with 2122 variant alleles and maps to 358 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000035493.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000045173.10	Tgfbi-201	2714	683aa	ENSMUSP00000037719.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36680	A1L353 P82198	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000225600.2	Tgfbi-204	3003	651aa	ENSMUSP00000153546.2	Nonsense mediated decay		Q3UXJ2	-
ENSMUST00000225300.2	Tgfbi-203	782	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000223661.2	Tgfbi-202	690	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000226024.2	Tgfbi-205	657	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 2,714 bps, Translation length: 683 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P82198

CCDS

This transcript is a member of the Mouse CCDS set: CCDS36680

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000045173.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000045173.10 Tgfbi-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000045173.10 Tgfbi-201

Summary

About Us

Get help

Our sister sites

Follow us