Mouse (GRCm39)
Description

structural maintenance of chromosomes 4 [Source:MGI Symbol;Acc:MGI:1917349]

Gene Synonyms

2500002A22Rik, Smc4l1

Location
About this transcript

This transcript has 24 exons, is annotated with 30 domains and features, is associated with 1725 variant alleles and maps to 407 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000042901.15Smc4-20143161286aaENSMUSP00000047872.9
 
Protein coding
CCDS17401Q8CG47 Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENSMUST00000107803.7Smc4-20239831261aaENSMUSP00000103433.2
 
Protein coding
E9Q2X6 GENCODE basicTSL:5
ENSMUST00000136502.8Smc4-2061163337aaENSMUSP00000115033.2
 
Protein coding
Q3U763 TSL:1CDS 3' incomplete
ENSMUST00000148385.8Smc4-207405746aaENSMUSP00000123350.2
 
Nonsense mediated decay
D6RCX2 TSL:1
ENSMUST00000195525.2Smc4-21178456aaENSMUSP00000141779.2
 
Nonsense mediated decay
A0A0A6YX07 TSL:5
ENSMUST00000149174.3Smc4-208557109aaENSMUSP00000142192.2
 
Nonsense mediated decay
A0A0A6YXY3 TSL:3CDS 5' incomplete
ENSMUST00000124983.2Smc4-203496No protein-
 
Protein coding CDS not defined
-TSL:5
ENSMUST00000128118.2Smc4-204756No protein-
 
Retained intron
-TSL:2
ENSMUST00000156354.2Smc4-209576No protein-
 
Retained intron
-TSL:2
ENSMUST00000194693.2Smc4-210549No protein-
 
Retained intron
-TSL:2
ENSMUST00000128134.2Smc4-205393No protein-
 
Retained intron
-TSL:2
Statistics

Exons: 24, Coding exons: 23, Transcript length: 4,316 bps, Translation length: 1,286 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8CG47

CCDS

This transcript is a member of the Mouse CCDS set: CCDS17401

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000042901.15

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.