Description

RAR-related orphan receptor alpha [Source:MGI Symbol;Acc:MGI:104661]

Location
Gene

This transcript is a product of gene ENSMUSG00000032238

This gene has 6 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
Rora-001ENSMUST0000003476610878 bp523 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS23314P51448 Q8BRL5 NM_013646
NP_038674
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Rora-002ENSMUST000001136242591 bp467 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS72268P51448 Q3U1P4 Q8BRL5
NM_001289916
NP_001276845
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Rora-006ENSMUST00000174296751 bp62 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-G3UZ02 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
Rora-003ENSMUST000001403511422 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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Rora-005ENSMUST00000132355561 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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Rora-004ENSMUST00000143507508 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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Statistics

Exons: 11 Coding exons: 11 Transcript length: 10,878 bps Translation length: 523 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS23314

Uniprot

This transcript corresponds to the following Uniprot identifiers: P51448

Ensembl version

ENSMUST00000034766.8

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays