Description

LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:MGI Symbol;Acc:MGI:1095413]

About this transcript

This transcript has 8 exons, is annotated with 4 domains and features, is associated with 13 variations and maps to 27 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Lfng-001ENSMUST000000315552305378aaENSMUSP00000031555
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS19821B2RRW2 O09010 NM_008494
NP_032520
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Lfng-003ENSMUST00000200626590No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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Lfng-002ENSMUST000001998481074No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Statistics

Exons: 8 Coding exons: 8 Transcript length: 2,305 bps Translation length: 378 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS19821

Uniprot

This transcript corresponds to the following Uniprot identifiers: O09010

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENSMUST00000031555.2

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays