Transcript: ENSMUST00000030816.4 Dffa-201

Description

DNA fragmentation factor, alpha subunit [Source:MGI Symbol;Acc:MGI:1196227]

Gene Synonyms

A330085O09Rik, DFF35, Dff45, ICAD-L, ICAD-S

Location

Chromosome 4: 149,188,603-149,205,104 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 17 domains and features, is associated with 1671 variant alleles and maps to 193 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000028974.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000030816.4	Dffa-201	2457	331aa	ENSMUSP00000030816.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS18951	O54786	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000103216.10	Dffa-202	1835	265aa	ENSMUSP00000099505.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS18952	O54786-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000153781.2	Dffa-203	279	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,457 bps, Translation length: 331 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O54786

CCDS

This transcript is a member of the Mouse CCDS set: CCDS18951

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000030816.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000030816.4 Dffa-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000030816.4 Dffa-201

Summary

About Us

Get help

Our sister sites

Follow us