Description

La ribonucleoprotein domain family, member 7 [Source:MGI Symbol;Acc:MGI:107634]

About this transcript

This transcript has 13 exons, is annotated with 25 domains and features, is associated with 26 variations and maps to 42 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Larp7-001ENSMUST000000295882121570aaENSMUSP00000029588
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS38626Q05CL8 NM_138593
NP_613059
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Larp7-004ENSMUST0000019766841180aaENSMUSP00000143331
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Larp7-003ENSMUST000001959761391No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Larp7-002ENSMUST00000197698733No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Statistics

Exons: 13 Coding exons: 12 Transcript length: 2,121 bps Translation length: 570 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS38626

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q05CL8

Transcript Support Level (TSL)

TSL:5

Ensembl version

ENSMUST00000029588.6

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays