Transcript: ENSMUST00000028280.14 Col5a1-201

Description

collagen, type V, alpha 1 [Source:MGI Symbol;Acc:MGI:88457]

Location

Chromosome 2: 27,776,437-27,929,526 forward strand.

About this transcript

This transcript has 66 exons, is annotated with 55 domains and features, is associated with 8876 variant alleles and maps to 737 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000026837.17 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000028280.14	Col5a1-201	8406	1838aa	ENSMUSP00000028280.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS15831	B1AWB9 O88207	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000238851.2	Col5a1-203	1281	289aa	ENSMUSP00000159095.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A5F8MQ70	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000145423.2	Col5a1-202	1049	349aa	ENSMUSP00000123532.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A3KGE7	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 66, Coding exons: 66, Transcript length: 8,406 bps, Translation length: 1,838 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O88207

CCDS

This transcript is a member of the Mouse CCDS set: CCDS15831

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000028280.14

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000028280.14 Col5a1-201

Summary

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Transcript: ENSMUST00000028280.14 Col5a1-201

Summary

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