Transcript: ENSMUST00000027560.8 Htr4-201

Description

5 hydroxytryptamine (serotonin) receptor 4 [Source:MGI Symbol;Acc:MGI:109246]

Gene Synonyms

5-HT4, 5-HT<4L>

Location

Chromosome 18: 62,457,275-62,600,877 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 34 domains and features, is associated with 7650 variant alleles and maps to 260 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000026322.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000027560.8	Htr4-201	4661	388aa	ENSMUSP00000027560.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29291	P97288	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000237114.2	Htr4-203	1389	377aa	ENSMUSP00000157982.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BA82	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000236691.2	Htr4-202	1267	363aa	ENSMUSP00000157470.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P97288-4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000238081.2	Htr4-204	1203	387aa	ENSMUSP00000157967.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P97288-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 4,661 bps, Translation length: 388 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P97288

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29291

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000027560.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000027560.8 Htr4-201

Summary

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Transcript: ENSMUST00000027560.8 Htr4-201

Summary

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