Description

FK506 binding protein 5 [Source:MGI Symbol;Acc:MGI:104670]

Location
About this transcript

This transcript has 14 exons, is annotated with 17 domains and features, is associated with 15 variations and maps to 33 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Fkbp5-004ENSMUST000001147923858456aaENSMUSP00000110440
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS37528B8JJC2 Q4FJN2 Q64378
-TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Fkbp5-201ENSMUST000001779393844456aaENSMUSP00000136245
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS37528B8JJC2 Q4FJN2 Q64378
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Fkbp5-001ENSMUST000000794133542456aaENSMUSP00000078382
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS37528B8JJC2 Q4FJN2 Q64378
NM_010220
NP_034350
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Fkbp5-002ENSMUST00000153744777191aaENSMUSP00000116466
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B8JJC2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Fkbp5-003ENSMUST00000143685836No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Fkbp5-005ENSMUST000001477162247No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 14 Coding exons: 10 Transcript length: 3,858 bps Translation length: 456 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37528

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q64378

Transcript Support Level (TSL)

TSL:2

Ensembl version

ENSMUST00000114792.3

Type

Known protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays