Description

general transcription factor II I repeat domain-containing 1 [Source:MGI Symbol;Acc:MGI:1861942]

About this transcript

This transcript has 30 exons, is annotated with 22 domains and features, is associated with 25 variations and maps to 19 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Gtf2ird1-204ENSMUST0000010065246831104aaENSMUSP00000098217
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS39307Q9EQE6 Q9JI57 NM_001081462
NP_001074931
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI4APPRIS candidate principal isoform (longest CCDS)
Glossary entry for APPRIS
APPRIS website
Gtf2ird1-203ENSMUST0000010065046021077aaENSMUSP00000098215
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS39306Q9EQE6 Q9JI57 NM_001081463
NP_001074932
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Gtf2ird1-202ENSMUST0000007411443741001aaENSMUSP00000073752
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS51657Q9EQE6 Q9JI57 NM_001081467
NM_001081469
NM_001081470
NM_001244936
NP_001074936
NP_001074938
NP_001074939
NP_001231865
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Gtf2ird1-201ENSMUST0000007316135921072aaENSMUSP00000072904
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS39305Q80ZG9 Q9EQE6 Q9JI57
NM_020331
NP_065064
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Gtf2ird1-209ENSMUST0000017179435111045aaENSMUSP00000129392
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS39304Q6PD35 Q80ZG8 Q9EQE6
NM_001081464
NP_001074933
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Gtf2ird1-206ENSMUST0000011124434541045aaENSMUSP00000106875
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS39304Q6PD35 Q80ZG8 Q9EQE6
NM_001081465
NP_001074934
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Gtf2ird1-207ENSMUST0000011124534541026aaENSMUSP00000106876
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS39302Q80ZG8 Q9EQE6 Q9JI57
NM_001081466
NP_001074935
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Gtf2ird1-205ENSMUST000001006543298974aaENSMUSP00000098219
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS39303Q9EQE6 Q9JI57 NM_001081468
NP_001074937
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Gtf2ird1-208ENSMUST000001670843283969aaENSMUSP00000132882
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q80ZG7 Q9EQE6 Q9JI57
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Statistics

Exons: 30 Coding exons: 29 Transcript length: 4,683 bps Translation length: 1,104 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS39307

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9JI57

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENSMUST00000100652.5

Type

Known protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays