Transcript: ENSMUST00000060077.7 Cpox-201

Description

coproporphyrinogen oxidase [Source:MGI Symbol;Acc:MGI:104841]

Gene Synonyms

Cpo, M100835, cac, clone 560, nct

Location

Chromosome 16: 58,490,655-58,500,749 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 17 domains and features, is associated with 1172 variant alleles and maps to 270 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000022742.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000060077.7	Cpox-201	3097	443aa	ENSMUSP00000055455.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49878	P36552	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000232532.2	Cpox-206	614	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000231342.2	Cpox-203	353	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000232176.2	Cpox-205	2994	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000231276.2	Cpox-202	1362	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000231492.2	Cpox-204	470	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 3,097 bps, Translation length: 443 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P36552

CCDS

This transcript is a member of the Mouse CCDS set: CCDS49878

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000060077.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000060077.7 Cpox-201

Summary

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Transcript: ENSMUST00000060077.7 Cpox-201

Summary

About Us

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