Transcript: ENSMUST00000020759.12 Efemp1-201

Description

epidermal growth factor-containing fibulin-like extracellular matrix protein 1 [Source:MGI Symbol;Acc:MGI:1339998]

Location

Chromosome 11: 28,803,204-28,876,743 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 46 domains and features, is associated with 3856 variant alleles and maps to 221 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000020467.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000020759.12	Efemp1-201	2037	493aa	ENSMUSP00000020759.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48761	Q8BPB5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000139713.2	Efemp1-203	1021	198aa	ENSMUSP00000114757.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6ZFS0	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000124103.2	Efemp1-202	778	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 2,037 bps, Translation length: 493 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8BPB5

CCDS

This transcript is a member of the Mouse CCDS set: CCDS48761

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000020759.12

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000020759.12 Efemp1-201

Summary

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Transcript: ENSMUST00000020759.12 Efemp1-201

Summary

About Us

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