Description

golgi associated PDZ and coiled-coil motif containing [Source:MGI Symbol;Acc:MGI:2149946]

Location
About this transcript

This transcript has 8 exons, is annotated with 9 domains and features, is associated with 21 variations and maps to 30 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Gopc-201ENSMUST000000200084293455aaENSMUSP00000020008
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS35898Q8BH60 NM_001199272
NM_053187
NP_001186201
NP_444417
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Gopc-202ENSMUST000001054754317463aaENSMUSP00000101115
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-K3W4Q9 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Statistics

Exons: 8 Coding exons: 8 Transcript length: 4,317 bps Translation length: 463 residues

Transcript Support Level (TSL)

TSL:5

Ensembl version

ENSMUST00000105475.5

Type

Known protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays