Description

RIKEN cDNA 1700125H20 gene [Source:MGI Symbol;Acc:MGI:1920884]

Location
About this transcript

This transcript has 6 exons, is annotated with 1 domain and feature, is associated with 15 variations and maps to 16 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
1700125H20Rik-001ENSMUST00000018623966236aaENSMUSP00000018623
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS48872Q9D979 NM_028589
NP_082865
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

1700125H20Rik-002ENSMUST00000100681687126aaENSMUSP00000098248
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9D979 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Statistics

Exons: 6 Coding exons: 6 Transcript length: 966 bps Translation length: 236 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS48872

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9D979

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENSMUST00000018623.3

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays