Transcript: ENSMUST00000108394.4 Hnf4g-202

Description

hepatocyte nuclear factor 4, gamma [Source:MGI Symbol;Acc:MGI:1353604]

Gene Synonyms

NR2A2

Location

Chromosome 3: 3,699,205-3,724,860 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 33 domains and features, is associated with 1505 variant alleles and maps to 294 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000017688.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000108394.4	Hnf4g-202	4080	462aa	ENSMUSP00000104031.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9QPS1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000108393.9	Hnf4g-201	2230	418aa	ENSMUSP00000104030.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS17226	Q059V1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 4,080 bps, Translation length: 462 residues

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000108394.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000108394.4 Hnf4g-202

Summary

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Transcript: ENSMUST00000108394.4 Hnf4g-202

Summary

About Us

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