Description

PAX interacting (with transcription-activation domain) protein 1 [Source:MGI Symbol;Acc:MGI:1890430]

Location
About this transcript

This transcript has 21 exons, is annotated with 33 domains and features, is associated with 22 variations and maps to 41 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Paxip1-001ENSMUST0000000229158501056aaENSMUSP00000002291
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS39039Q6NZQ4 NM_018878
NP_061366
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Paxip1-007ENSMUST0000019673474992aaENSMUSP00000142578
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
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Paxip1-004ENSMUST00000199993381No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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Paxip1-005ENSMUST000001997143829No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Paxip1-002ENSMUST00000197625736No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Paxip1-008ENSMUST00000196641717No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Paxip1-006ENSMUST00000196605515No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Statistics

Exons: 21 Coding exons: 21 Transcript length: 5,850 bps Translation length: 1,056 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS39039

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6NZQ4

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENSMUST00000002291.8

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays