Description

motor neuron and pancreas homeobox 1 [Source:MGI Symbol;Acc:MGI:109160]

Location
About this transcript

This transcript has 3 exons, is annotated with 17 domains and features, is associated with 13 variations and maps to 17 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Mnx1-001ENSMUST000001655122245404aaENSMUSP00000129503
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS19150A2RSX2 NM_019944
NP_064328
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Mnx1-201ENSMUST000000016082018404aaENSMUSP00000001608
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9QZW9 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Statistics

Exons: 3 Coding exons: 3 Transcript length: 2,245 bps Translation length: 404 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS19150

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENSMUST00000165512.3

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays